Significance tests were done using R implemented. All calculations and visualization presented in this work were carried out with R studio.
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PVs associated with each host (Pgt0.05) were calculated by pangenome genome-wide association studies (GWAS) software Scoary after 500 permutations.
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It works under 64-bit systems in Windows, Linux and macOS environments, and can analyze source code intended for 32-bit, 64-bit and embedded ARM platforms.
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